Counting and sampling SCJ small parsimony solutions
نویسندگان
چکیده
منابع مشابه
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies
Reconstructing ancestral gene orders in a given phylogeny is a classical problem in comparative genomics. Most existing methods compare conserved features in extant genomes in the phylogeny to define potential ancestral gene adjacencies, and either try to reconstruct all ancestral genomes under a global evolutionary parsimony criterion, or, focusing on a single ancestral genome, use a scaffoldi...
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The Single Cut or Join (SCJ) operation on genomes, generalizing chromosome evolution by fusions and fissions, is the computationally simplest known model of genome rearrangement. While most genome rearrangement problems are already hard when comparing three genomes, it is possible to compute in polynomial time a most parsimonious SCJ scenario for an arbitrary number of genomes related by a bina...
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Reconstructing ancestral gene orders in a given phylogeny is a classical problem in comparative genomics. Most existing methods compare conserved features in extant genomes in the phylogeny to define potential ancestral gene adjacencies, and either try to reconstruct all ancestral genomes under a global evolutionary parsimony criterion, or, focusing on a single ancestral genome, use a scaffoldi...
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ژورنال
عنوان ژورنال: Theoretical Computer Science
سال: 2014
ISSN: 0304-3975
DOI: 10.1016/j.tcs.2014.07.027